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[GBA]
vga_scaler=1
vscale_mode=0
ypbpr=1
composite_sync=1
;video_mode=320,16,30,34,240,2,3,22
video_mode=320,8,32,24,240,4,3,16,6048
;video_mode=320,10,20,54,240,6,8,10,6400
;video_mode=320,16,30,34,240,2,3,22,6400
Using the same modes on the main MiSTer menu works just fine (albeit with a very wide MiSTer menu image). I'm not sure what's happening on the GBA that basically overrides the VGA scaler. It also happens regardless of whether I have the above ypbr=1, composite_sync=1 and vscale_mode=0 settings present or not.
edit: Also happens whether on Homebrew or original BIOS. Also tried forced_scandoubler=0, to no avail.